Command line tools¶
janggu
¶
The janggu app can be used to browse through the results of one or more models using webbrowser of your choice.
Example usage:
janggu -path <results-root> -port <PORT>
janggu-trim
¶
janggu-trim can be used to trim the interval starts and ends of a given BED/GFF file which is intended for creating the ROI by a specified factor.
Trimming might circumvent undesired round effects when
using resolution>1
and store_whole_genome=True
to handle covarage data with Cover
.
Therefore, we suggest to trim the ROIs that are used during
training and evaluation beforehand. For the sake of convenience,
we added the tool janggu-trim to do that.
Example usage:
janggu-trim input.bed trimmed.bed -divby 50