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Janggu - Deep learning for Genomics
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Genomic Datasets
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Janggu
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Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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J
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L
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N
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O
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P
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R
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S
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T
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Z
A
Array (class in janggu.data)
B
Bioseq (class in janggu.data)
C
compile() (janggu.Janggu method)
Complement (class in janggu)
Cover (class in janggu.data)
create() (janggu.Janggu class method)
create_by_name() (janggu.Janggu class method)
create_from_array() (janggu.data.Cover class method)
create_from_bam() (janggu.data.Cover class method)
create_from_bed() (janggu.data.Cover class method)
create_from_bigwig() (janggu.data.Cover class method)
create_from_file() (janggu.data.GenomicIndexer class method)
create_from_refgenome() (janggu.data.Bioseq class method)
create_from_seq() (janggu.data.Bioseq class method)
D
Dataset (class in janggu.data)
DnaConv2D (class in janggu)
E
evaluate() (janggu.Janggu method)
export() (janggu.Scorer method)
ExportBed (class in janggu)
ExportBigwig (class in janggu)
ExportJson (class in janggu)
ExportScorePlot (class in janggu)
ExportTsv (class in janggu)
F
fit() (janggu.Janggu method)
G
GenomicIndexer (class in janggu.data)
get_config() (janggu.Janggu method)
H
HeatTrack (class in janggu.data)
I
input_attribution() (in module janggu)
inputlayer() (in module janggu)
J
Janggu (class in janggu)
janggu (module)
L
LineTrack (class in janggu.data)
LocalAveragePooling2D (class in janggu)
LogTransform (class in janggu.data)
N
name (janggu.data.Dataset attribute)
(janggu.Janggu attribute)
NanToNumConverter (class in janggu.data)
normalize_garray_tpm() (in module janggu.data)
O
outputconv() (in module janggu)
outputdense() (in module janggu)
P
PercentileTrimming (class in janggu.data)
plotGenomeTrack() (in module janggu.data)
predict() (janggu.Janggu method)
predict_variant_effect() (janggu.Janggu method)
R
RandomOrientation (class in janggu.data)
RandomShift (class in janggu.data)
RandomSignalScale (class in janggu.data)
ReduceDim (class in janggu.data)
RegionLengthNormalization (class in janggu.data)
Reverse (class in janggu)
S
save() (janggu.Janggu method)
score() (janggu.Scorer method)
Scorer (class in janggu)
SeqTrack (class in janggu.data)
shape (janggu.data.Dataset attribute)
SqueezeDim (class in janggu.data)
summary() (janggu.Janggu method)
T
Track (class in janggu.data)
Transpose (class in janggu.data)
Z
ZScore (class in janggu.data)
ZScoreLog (class in janggu.data)
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